Exposing the Discovery Institute Part 3: Michael Behe

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Hey everyone, we’re back with more of this series  exposing all the frauds associated with Discovery   Institute, the Christian propaganda mill hellbent  on pushing religion as science. We’ve already   made mincemeat of Casey Luskin and Stephen  Meyer, so today we move on to Michael Behe.  Now unlike most of the DI’s sad little roster,  Behe was at one point a real scientist,   a biochemist who published real research. But so  is James Tour, and we are well aware how ignorant   and dishonest he is when it comes to science that  infringes on his faith. As will become clear,   devout Catholic Behe, the DI’s starting pitcher,  so to speak, is pretty much the same as Tour.   A real scientist, but on topics like evolution,  he's just embarrassingly wrong, and also a liar,   even if a little less unhinged than Tour. With this in mind, we are going to examine   the claims that Behe makes, most notably  the concept of “irreducible complexity”   that he is famous for, and demonstrate  that they are nothing more than run of   the mill science denial. Ready? Let’s begin. In addition to his full-time academic career,   Behe is a Senior Fellow at the Center for  Science and Culture at Discovery Institute,   whose agenda was described in great detail  in parts 1 and 2 so we won’t backtrack here.   Those who are familiar with the scripture of  intelligent design are likely aware that Behe’s   primary contribution to their mission has been to  coin “irreducible complexity” as a concept that   applies to biological systems and is probably  their single favorite anti-evolution argument.  Behe’s first and most popular work is  Darwin’s Black Box, published in 1996,   in which he makes the case against evolution  based on this concept of irreducible complexity.   Despite the book being promoted as a  “scientific” rebuttal to “Darwinian” evolution,   it obviously was not subject to peer review. It’s  a book written for a mass audience of laypeople,   not Behe’s peers in the scientific community,  just as with all the books written by anyone   else affiliated with the DI. This is how  the intelligent design movement operates,   exclusively outside the scrutiny of real science,  and for very good reason, as we shall see.  So what is irreducible complexity? Here’s  how Behe defines it in Darwin’s Black Box:   “By irreducibly complex I mean a single  system composed of several well-matched,   interacting parts that contribute to the basic  function, wherein the removal of any one of   the parts causes the system to effectively cease  functioning. An irreducibly complex system cannot   be produced directly (that is, by continuously  improving the initial function, which continues to   work by the same mechanism) by slight, successive  modifications of a precursor system, because any   precursor to an irreducibly complex system that  is missing a part is by definition nonfunctional.   An irreducibly complex biological system, if there  is such a thing, would be a powerful challenge to   Darwinian evolution. Since natural selection can  only choose systems that are already working,   then if a biological system cannot be  produced gradually it would have to arise   as an integrated unit, in one fell swoop, for  natural selection to have anything to act on.”  So to put it even more simply, he is  saying that if a biological system,   such as their absolute favorite example,  the bacterial flagellum, has multiple parts,   and it needs all of those parts for the system  to work, the system could not have evolved via   so-called “Darwinian” means, because there isn’t  a step-by-step pathway to go from not having that   system, to having the complete, functional  system as it currently exists. Any simpler   or incomplete version of that system would be  non-functional and thus could not be selected for.   Now, there are three ways to interpret this  paragraph from Behe’s book, and Behe has   seemed to float between them based on the specific  context, so rather than trying to divine exactly   what he means, we’ll take each one and explain  why it doesn’t work. Remember, the hypothesis   Behe is proposing is that systems which meet his  criteria for irreducible complexity cannot evolve.  The first way to interpret this argument is the  most literal interpretation, that the hypothesis   only applies to Darwinian mechanisms of evolution,  since he specifies “a challenge to Darwinian   evolution”. Charles Darwin published  On the Origin of Species in 1859,   in which he described evolution as a  process that occurs via natural selection   acting on heritable variation within populations.  Traits that confer a fitness advantage, meaning a   comparative edge in successfully reproducing and  having offspring who also subsequently reproduce,   will become more common as generations pass,  at the expense of less beneficial traits. As   differences accumulate, populations and species  may split in two, leading to new species, and   through this mechanism, all extant organisms are  related via common ancestry. In modern parlance,   “Darwinian” evolution is natural selection  acting on variation caused by mutations.  Remember, the relevant question when it comes  to the irreducible complexity hypothesis is “can   this system evolve?” Therefore, if we’re limiting  the mechanisms to just those proposed by Darwin   in 1859, the concept of irreducible complexity is  irrelevant. There are many, many other mechanisms   of evolution that we’ve discovered since 1859.  A list of them would include genetic drift,   sexual selection, recombination, gene flow  - including horizontal gene transfer, niche   construction, and epigenetics, most of which are  explained in my biology series for those looking   for some background information on mechanisms of  evolution. But the point is that we do not refer   to these mechanisms as “Darwinian”, since Darwin  did not describe them, as he was unaware of the   entirety of genetics. It would be silly to develop  a criterion that excludes all but the most basic   mechanisms of evolution and then write a book  arguing that this criterion precludes evolution   in general, given the reality of all these other  evolutionary mechanisms. Behe recognizes that   other mechanisms exist, but incorrectly insists  on calling any “unguided” process “Darwinian”.  And gene duplication, that’s fine,  that’s one event though. So, yeah. So,   any unguided process. Alright, any unguided  pro... Ok, any unguided processes, got it. So…  Pretty bush league error, but let’s give Behe  a pass here and revise his hypothesis for him.   So a better interpretation of irreducible  complexity is that we are considering not   just the kinds of processes Darwin proposed,  but all evolutionary processes. In that context,   there are two remaining versions of the  hypothesis, and neither one is any better than   the first. The second possible interpretation,  and the “best” one, if we can call it that,   in terms of being an actual, testable hypothesis,  could be stated as “no systems that meet the   criteria for irreducible complexity can arise  through evolutionary processes”. Unfortunately,   since this form of the argument is actually  testable and falsifiable, it has, of course,   been falsified. Many times. All it takes to  invalidate this argument is a single observed   instance of the evolution of a system that  checks Behe’s boxes, and we have more than that.  One example comes from the famous Lenski  Long Term Evolution Experiment, or LTEE,   which we mentioned briefly in the Meyer debunk.  In this experiment, 12 populations of E. coli have   been evolving in the lab since 1988. They’re grown  with glucose as the only food source, but one of   the twelve populations evolved the ability to  metabolize another compound in their environment:   citrate. E. coli can digest citrate, but  only when there isn’t any oxygen around.   This one group of E. coli started eating citrate  in our normal, oxygen-containing atmosphere,   and when researchers looked into how that  happened, they found a bunch of mutations,   all of which were required for the  new trait, which they called “Cit+”.  Specifically, there were mutations to the CitT  gene, mutations in another gene called DctA,   and a duplication of that CitT gene into a new  region of the E. coli genome. It was this new   copy that was active under aerobic conditions,  conferring the Cit+ trait, but the duplication   alone wasn’t sufficient. The Cit+ E. coli needed  all of the mutations to have the new trait,   meaning it meets Behe’s criteria for irreducible  complexity: a novel function requiring multiple   mutations or changes to the genome, none of  which can have been selected for individually.   Now, since we got to see it evolve before our  eyes in this long-running evolution experiment,   we’ve instantly falsified this version  of the irreducible complexity hypothesis.   Ironically, one of Behe’s colleagues at  Discovery Institute, Dr. Scott Minnich,   a professor in the Department of Agricultural  and Life Sciences at the University of Idaho,   co-authored a paper describing this pathway  in detail, inadvertently highlighting its   irreducible nature. I’m sure he got a slap  on the wrist from Meyer and pals for that.  Moving on from E. coli, there are other such  directly observed examples of irreducibly   complex traits evolving. There is the VPU protein  in HIV-1 group M, the lineage of HIV responsible   for the global HIV pandemic first documented in  the early 1980s. This now has a novel function   inactivating a protein of the human immune system  called tetherin. Human tetherin is different   enough from the same protein in chimpanzees  such that simian immunodeficiency virus,   from which HIV evolved, can’t counter it. This new  trait requires three to seven specific mutations,   leading to several completely new protein  binding sites. HIV only jumped from chimps   into humans around 1930, so this is another recent  example of an irreducibly complex trait evolving.  There are also the many animals that eat  photosynthetic algae which appear to be on   their way to becoming photosynthetic themselves  via endosymbiosis. There are lizards which are   transitioning from laying eggs to live birth, in  one case doing both in a single litter. There are   the unicellular algae that evolved in the  lab to become permanently multicellular.   All of these traits are extremely complex and  unquestionably meet Behe’s criteria. And since   they’ve all unquestionably evolved,  each one falsifies Behe’s claim that   irreducibly complex systems can’t evolve. “But wait!” says the creationist. “Sure,   some irreducibly complex systems could evolve,  but there are some biological systems so complex   that they definitely couldn’t.” This is  what you find behind door number three of   the irreducible complexity argument: Irreducible  complexity doesn’t entirely preclude evolution,   but there are some cases in which it does.  This is, unfortunately for creationists,   an unfalsifiable claim. It turns a scientific  hypothesis into a game of whack-a-mole.   No matter how many times creationists  point to a supposedly unevolvable system,   and then biologists figure out its evolutionary  history, there’s always another system   creationists will point to and say “but this  one, surely, this one couldn’t have evolved.”   So if creationists want to fall back to  this version of irreducible complexity,   they are welcome to it, but it’s not real science,  and it is utterly transparent in its desperation.  People like Behe, and especially the  non-scientists who hold up his claims as gospel,   will avoid and redirect by whatever means  necessary, no matter the level of dishonesty   required. That’s why even Behe himself pushes  the same tired trope of using man-made objects   to pretend that evolution is impossible.  There is a reason all creationists do this.   Behe needs the example to be relatable for the  layperson or its manipulative power falls apart.  Now it turns out, if any of these parts are  missing, the trap doesn’t work. So, not only is   it complex, it’s what I call irreducibly complex.  You can’t take a part away and still have it work.   If you took away this hammer, you know the mice  don’t get caught. You take away the spring or the   holding bar, any of the pieces, it doesn’t work. That’s right, a mouse trap. Something humans   built, for a specific purpose, doesn’t work the  way it’s supposed to work if it’s not built the   way we designed it. So basically, humans build  things, therefore everything must have been built.   An argument so stupid, a child could debunk it.  Do you see how all proponents of intelligent   design eventually sound just like Kent  Hovind if you listen to them long enough?  This is made of natural components, is  it possible for a pen to make itself?   Or does this require a designer, whether I ever  meet the guy or not, would you say it’s logical   to say this had a designer? But we immediately see that   the arrangement of these parts has a purpose. And  so we immediately grasp the intelligence that was   needed to produce something like this. Virtually indistinguishable. This same   dishonesty is behind the persistent fixation  on biological functionality that is seemingly   analogous to machinery. It’s a way to make the  mouse trap comparison seem more valid. Hence,   the bacterial flagellum, which has some parts  that work together, kind of like a machine.   This is presented ad nauseam because Behe’s  targets do not understand what is involved   in generating any of the new functionalities  we described with E. coli or HIV, as it   requires some knowledge of genetics, so they don’t  understand that these examples debunk irreducible   complexity. They just need to see something  that looks kind of like a machine to them,   and the dishonest comparison to the actual  machine will have a shot at convincing them.  Here’s a bacterium. A single-cell  microbe. Some bacteria have a flagellum,   which is like an outboard motor on a boat.  It rotates to propel bacteria through liquid,   and it’s necessary for their survival,  in order to swim to search for food.   A flagellum has a number of parts. A drive  shaft, a universal joint, a rotor, bushings,   stator, even a clutch and braking system. The  motor of the flagellum has been clocked at 100,000   revolutions per minute. And as with the mouse  trap, removing even one component of this elegant   machine destroys its function and renders the  bacterium, shall we say, dead in the water.   The flagellum is irreducibly complex.  Notice the constant references to other machines  and machine parts. This is very deliberate.   Well unfortunately for Behe, even the evolution  of the bacterial flagellum has been explained.   He simply relies on his audience not knowing  that these proteins which comprise the system   can have, and did have, alternative functions  as parts of other systems. There are countless   examples in evolutionary history of an existing  functional protein being co-opted to serve some   other function, particularly following  gene duplication. But more importantly,   the system is not irreducibly complex. A simpler  system could still function, and in fact a simpler   flagellum does indeed exist in certain extant  species of archaea. The flagellum can be reduced,   so it is not irreducible. Behe can’t demonstrate  that every protein is needed for functionality,   he just blindly asserts it. Remember that nature  finds something that works and then refines it   over time. He has no idea what past iterations  of a flagellum looked like. A version that merely   twitches instead of rotating smoothly would also  produce motion, and thus could be selected for.   Behe doesn’t even specify a particular bacterial  flagellum despite the fact that there are many   types. And of course he ignores any potential  alternate functions for any of these structures,   which do exist. Some flagella export proteins.  Spirochete flagella maintain cell shape.   Some flagella are used for cell-to-cell contacts.  These are functions that can be selected for,   allowing for novel function to emerge over  time. And in fact, similar structures used   by some bacterial species are capable of  injecting poison into other organisms.  And it turns out, the two structures look similar  for a reason. The syringe on the right is made of   a subset of the very same protein types found in  the base of the flagellum on the left. Though the   syringe is missing proteins found in the motor,  and therefore cannot produce rotary motion,   it functions perfectly as an  apparatus for transmitting disease.  There you go. It’s reducible.  But Behe just doesn’t get it.   Here he is complaining in a 2016 blog post for ID  propaganda outlet Evolution News, where he wants   someone to take a bacterial species, knock out the  genes for the flagellum, apply selective pressure,   and wait for it to evolve a flagellum or  an equally complex system. Hilariously,   he is oblivious to the fact that this precise  experiment was carried out the year before.   Here’s the paper. Gene deletion produced  two strains of bacteria with no flagellum.   They then introduced selective pressure for  motility by depleting the nutrients in the   colony. Within 96 hours, both strains  had regenerated flagellar motility   by a pathway involving two successive point  mutations in genes that served other purposes.   Exaption of genes for a novel purpose is something  these DI folks don’t want anyone to know about,   but either way, we’ve shown conclusively that the  bacterial flagellum is not irreducibly complex.  This same treatment can be offered for any other  system they try to complain about, and when shown   to their face the clear pathway by which it either  evolved in front of our eyes, or likely evolved in   the past, it’s never anything but obfuscation and  redirection. This is one of the many ways we know   that intelligent design isn’t science, because  that’s not how scientists behave. Scientists   acknowledge data, and in the case of anomalous  data, science is revised to fit the new data.  Interestingly, in an attempt to appear empirical  on the matter, Behe himself published the results   of a simulation ostensibly testing his idea.  The paper is titled “Simulating evolution by   gene duplication of protein features that require  multiple amino acid residues”, by Michael Behe   and David Snoke, and it was published in the  journal Protein Science in 2004. In this paper,   Behe and Snoke describe a simulation in which  they documented the time it would take to evolve   a new trait requiring two specific mutations - in  other words, how long it would take to evolve a   new trait with irreducible complexity. They and  other ID proponents have touted the results as   validating not just the concept of irreducible  complexity but intelligent design as a whole,   when in reality the opposite is true. In their  model, Behe and Snoke permitted only single-base   mutations and natural selection. No recombination,  no duplications beyond the initial presumed one,   no other evolutionary changes. They also  specified a pre-determined target sequence   and only considered the simulation to have been  “successful” if that specific target evolved.   In other words, they made the same errors other  creationists have made and continue to make when   they invoke things like the so-called “waiting  time problem”, which we talked about in the Meyer   debunk. They are pretending that nature has to do  an extremely specific thing in order to evolve,   when it just doesn’t, and they all know  this. Hilariously, despite all these flaws,   Behe and Snoke found that their target sequence  did actually evolve, in population sizes and   timeframes that are entirely realistic, and if  anything, quite small compared to real-world   populations. The paper literally proves them  wrong, and they somehow count it as a win anyway.  This and other revelations about Behe’s work were  exposed because of the Kitzmiller v. Dover case,   which we also talked about in the Meyer debunk.  This was the most recent in a line of cases   testing the legality of evolution and creationism  in the public science classroom whose lineage   stretches back to the 1925 Scopes monkey trial.  The school district in question added a one-page   statement on “intelligent design” to its high  school biology curriculum, which was challenged   as an Establishment Clause violation by parents  and teachers. Both sides brought their big names   as expert witnesses in the ensuing trial, and on  the ID side, no name was bigger than Michael Behe.   His “expert testimony” in defense of ID went well  enough, but his cross-examination, much less so,   as can be seen by anyone who reads the  transcript which is freely available.  When questioned about his 2004 paper, Behe  tacitly acknowledged that the population size   in their model was orders of magnitude smaller  than real-world bacterial populations, which   had the effect of vastly underestimating the rate  at which such “irreducible” traits could evolve,   even without the other unrealistic constraints  of their model. In one striking exchange,   Behe acknowledged a paper which indicated that  there are more prokaryotes in a single ton   of soil than in his model population, and that  there is a lot more than one ton of soil on Earth.  He also made a complete fool of himself in a  discussion about theories. Here he is sounding   like a flat earther, attempting to contrast  theory and fact, as though they are antonyms.   He then goes on to acknowledge that in order for  intelligent design to be considered science at   all, a redefinition of the concept of a scientific  theory would be required, and this new definition   “sweeps in a lot more propositions”,  including superstitions like astrology.   So yes, ID is a theory like astrology  is a theory, in that they both aren’t.  Furthermore, the Dover trial illustrated something  that is a bit of a trend throughout Behe’s work:   ignoring existing research on a topic in order to  claim that there just isn’t an explanation for X,   or we’ve never seen Y, when in fact  we have exactly what Behe wants. He   just refuses to acknowledge it. This tendency  was revealed under cross-examination in Dover   as lawyers for the plaintiffs produced literal  stacks of papers and books on the evolution of   systems which Behe not only claimed scientists  are ignorant of, but are actually impossible   to evolve due to their “irreducibly complex”  nature. At one point, when claiming the immune   system was irreducibly complex, he was presented  with 58 peer-reviewed publications, nine books,   and several immunology textbook chapters about  the evolution of the immune system, which we   know a lot about from studying the immune systems  of many different extant species which exhibit   a tremendous variety in their complexity. But  like a child, “nuh uh” was Behe’s best defense.  And that’s all Behe really had. ID is like  astrology, and pretending science which   proves him wrong isn’t real. Since Behe was  the highlight of the trial for the ID side,   it’s no wonder the judge scathingly rebuked the  school district and tossed out intelligent design   as creationism with a new name. In fact, the  “intelligent design textbook” purchased by the   district with an anonymous donation originally  started out as a “creation science” text,   containing this definition: “Creation means that  the various forms of life began abruptly through   the agency of an intelligent creator with their  distinctive features already intact. Fish with   fins and scales, birds with feathers, beaks,  and wings, etc.” But a subsequent edition,   dated shortly after the 1987 Edwards v. Aguillard  decision, in which the Supreme Court ruled that   “creation science” is a religious concept and  therefore a violation of the Establishment   Clause if taught in public school science classes,  contained this definition of intelligent design:   “Intelligent design means that various forms of  life began abruptly through an intelligent agency,   with their distinctive features already intact –  fish with fins and scales, birds with feathers,   beaks, and wings, etc.” Shockingly similar, huh?  An early post-Edwards version even contained the   telling typo “cdesign proponentsists”, where the  word “creationists” was improperly replaced by   “design proponents”. How much more transparently  can it be demonstrated that intelligent design is   just creationism with a different name  literally cut and pasted in its place?   Of course Behe is aware of all this, but  continues to lend his credentials and reputation   to the cause so that the ID movement can  dishonestly misrepresent itself as real science.  We have two more of Behe’s books to tear apart,  but first let’s pause for a quick announcement.   What can you do to help fight against  these dark forces of science denial?   The only remedy is knowledge. And I  know a great place to get a lot of it.  Brilliant offers extensive courses in  dozens of areas of science and math.   More than simply a collection of lecture videos,  Brilliant utilizes hands-on interactive problem   solving for a more engaging way to learn. In the  realm of the chemical and biological, there are   courses on the chemical reaction, computational  biology, probably something these DI folks need   to brush up on, and more. I recommend “Everyday  Math”, which reinforces useful math concepts   like fractions and ratios using intuitive  visuals. There are courses on data science,   logic, statistics and finance, and tons of  other topics with real practical application,   and all of these are crafted by top  experts at places like Caltech and MIT.   Don’t waste another moment, join over ten million  people learning on Brilliant and sign up today.   Visit Brilliant.org/ProfessorDaveExplains to get  started, and the first 200 people to sign up will   get 20% off their subscription. Happy learning! Moving on, Behe’s second book, The Edge of   Evolution, was published in 2007. Of course  like any other book, it was not peer-reviewed,   and it shows. Had an evolutionary biologist  given it a once-over prior to publication,   the many basic errors could have been addressed,  things like incorrectly defining the concept of   evolutionary fitness, mis-stating what is meant  by the mitochondrial most recent common ancestor,   implying that evolution is synonymous with  “random”, misrepresenting the genetics   underlying developmental processes, and  getting the units for “mutation rate” wrong.  He also analogizes evolutionary  competition to trench warfare,   in contrast to the frequently employed “arms  race” analogy, the attempted point being that   evolution ultimately results in a destructive  stasis rather than progress. But his history is   as bad as his biology on this point, because World  War I saw enormous innovation in infantry tactics,   such as infiltration tactics, small unit tactics,  and combined arms involving infantry, artillery,   and ultimately tanks, all of which ultimately  led to Blitzkrieg. So likening evolution to   trench warfare is a surprisingly good analogy,  but for the precise opposite reason Behe thinks.  Of course, these are small quibbles. The real  problem here is that Behe is essentially making   a book-length “waiting time problem” argument.  He picks examples of evolution that he thinks   represent the absolute maximum rate at which  evolution can occur, tries to show how that rate   is too slow to accomplish anything significant,  even in the entire history of life on earth,   and argues that there must therefore be some  underlying intelligent force causing or guiding   evolutionary change. Let’s break our refutation  of this fallacious argument into two parts.   First we’ll look at conceptual problems stemming  from Behe’s poor understanding of evolutionary   biology, and then we’ll examine why he’s  wrong about the specific examples he employs.  Big picture first, Behe’s arguments are based  on clear misunderstandings of basic aspects   of evolutionary theory. For example, he seems  to think that for any given biochemical trait,   like drug resistance or disease immunity, there is  one way, and only one way, to accomplish that job,   despite he himself describing the biochemical  details of more than one form of malaria   resistance found in humans. Direct experiments  on this question using random DNA sequences   have shown that there are often many ways  of accomplishing the same biological job.  He also talks about what evolutionary processes  can and cannot accomplish “by themselves”,   as though they take turns as species evolve.  Well, evolutionary processes don’t operate   “by themselves”, in a vacuum. In reality, a  number of processes - selection, mutation, drift,   recombination, and others - are all operating  simultaneously. Examining each one on its own   and throwing up your hands at their limitations is  straight from the traditional “creation science”   playbook. You can find writers for Answers  in Genesis explaining how natural selection   can’t create anything new, without bothering to  acknowledge that mutation and recombination can.  Speaking of recombination, like the other  proponents of the waiting time problem,   Behe ignores recombination entirely. He seems to  think that as the number of mutations needed for   a trait increase, you need a correspondingly large  increase in population size to have even a chance   of evolving that trait, since of course it would  take longer and longer to get them sequentially.   And also, if any step in the process is harmful,  like if a set of two mutations is beneficial,   but each individual mutation is harmful, no  evolution for you. Both of these “problems” are   solved by recombination, removing the requirement  that individual mutations occur sequentially   and persist until the next one occurs in the same  lineage. Two versions of the same chromosome,   each with one mutation, can cross over and  produce one chromosome with both mutations,   going from one to two pertinent mutations  in a single generation. Again, check the   Meyer debunk for a full explanation of this. Later, Behe butchers the concept of fitness   landscapes in a way that is both extremely  basic and completely undermines his argument.   To understand how, we need to take a moment to  explain fitness landscapes. A fitness landscape   is a representation of how different genotypes  are more or less fit in a specific environment.   They’re usually shown visually as two-  or three-dimensional graphs of fitness   as a product of genotype. More fit genotypes  are shown as higher elevations on the landscape.   That “in a specific environment” part is  important, because fitness is all about context.   In one time or place, a particular genotype  might be extremely fit, but in a different   time or place, it might have low fitness. Behe completely misses this trivial detail.   He argues that crossing “valleys” is  impossible via evolutionary processes,   since any intermediate between two peaks or  two high-fitness genotypes will be low fitness,   and selected against. In making this argument, he  assumes that fitness landscapes are constant, and   genotypes have fixed fitness values, regardless  of environmental or ecological conditions.   He clearly is not familiar enough with basic  evolutionary concepts to make a coherent argument,   since variable fitness landscapes solve the  problem he says is unsolvable. As conditions   change, genotypes that were valleys previously  can come to occupy new fitness peaks, and what   were peaks can become valleys. So selection will  favor different genotypes over time, allowing   a population to cross from one peak to another.  Again, this is super basic, and it’s inexcusable   that Behe doesn’t understand it, or much worse  if he does, and makes the argument anyway.  The final conceptual problem here is that he  constantly, like virtually all of his Discovery   Institute colleagues, uses “Darwinism” as  a synonym for “evolution”, knowing full   well that the vast majority of evolutionary  biology is based on non-Darwinian processes,   or stuff that we figured out well after Darwin. Darwinists will be happy to talk with you all day.   Nobody’s even tried to explain how a Darwinian  process could produce the blood clotting system   or the flagellum, and so on. Darwin’s mechanism  can do this or that or the other thing.  I talked about this misleading language in  the Luskin debunk, much to the dislike of   Gunter Bechly, who whined about it in a series  of pathetic blog posts for Evolution News that   acknowledged none of the meat of my video. For  that move he earned himself a spot in this series,   so we will deal with him and his lies  later. But for now, Behe knows full well   that he’s misleading his audience by calling  aspects of evolutionary theory from the 1980s   “Darwinian”, in an attempt to reduce the entire  field of evolutionary biology to the utterances   of a single dead prophet. A mere belief system  that can be pitted against other belief systems,   like religion, when in fact evolution is the  cornerstone of biology, which is a science. It’s a   smear campaign. But having a boogeyman is useful,  so he goes all in just like the rest of them.  They should probably listen to biologist and  christian Josh Swamidass, who acknowledges   this misspeak on the part of creationists. And I’m not a Darwinist. Biologists aren’t   Darwinists. Ken Miller isn’t a Darwinist.  Eugenie Scott is not a Darwinist either.   We’ve moved on from Darwin, who was like  150 years ago. We’re dealing with more   modern evolutionary science to be clear. That’s right, folks. From the mouth of   a christian, biologists aren’t Darwinists. Funny  how the DI frauds just keep saying it anyway, huh?  These problems on their own are enough for anyone  to toss out Edge of Evolution as complete garbage,   but the specific examples he picks to represent  the so-called “edge” of evolution – the   evolutionary speed limit, essentially - are  terrible examples to use. The two cases he   focuses on – and yes, he picks only two cases  and extrapolates to literally all life – are   chloroquine resistance in plasmodium, the parasite  that causes malaria, and HIV adaptation in humans.  In my second book, the Edge of Evolution,  I discuss the evolution of resistance   of malaria cells to chloroquine, an anti-malarial  drug. And I point out that in the, in its journey   before it evolved this resistance, there were  10^20, an astronomical number of malarial cells   that could have evolved or could have mutated  or something, to produce some really snazzy new   molecular machinery. And it turns out that when  the changes conferring chloroquine resistance onto   the malaria were discovered, they were just two  crummy little changes, in a pre-existing protein   in the malarial cell. So that, I  think, was just straight, pretty much   micro, Darwinian microevolution. The first problem is that both cases are   examples of directional selection. This is when a  population is under a single overriding selective   pressure, in these cases drug exposure and living  in a new host. Under directional selection,   the single trait under selection will experience  rapid adaptation until it gets “good enough”,   so to speak. Then we have “stabilizing selection”,  or selection against any future changes,   because they could make the trait worse. What Behe  should have focused on is disruptive selection,   or selection for different traits in a single  population - or adaptive radiation events - when   one species or population diversifies under  a range of selective pressures, not just one.  The second problem with Behe’s argument is that  he ignores competing selective pressures that slow   down one-dimensional adaptation. He actually talks  about this elsewhere as a problem for evolution,   but somehow doesn’t realize that it applies  to his own argument. Basically, there are   tradeoffs to everything. Drug resistance is a  common example. Germs can gain drug resistance,   but that costs energy, so in the absence of the  drug, resistance can actually be harmful. That   energy cost is still there even when the germs are  not benefiting from the drug resistance, and it   often gets worse the more resistant they are. So  you’ll see rapid evolution of resistance until the   costs outweigh the benefits. Then we see, again,  stabilizing selection: get less resistant and you   die, get more resistant and you’re wasting energy. So Behe takes an example of drug resistance, says   “this is a strong selection pressure, so it should  be fast evolution”, and then says “but we only see   X changes in Y years, so evolution is too slow!”  ignoring that this is exactly what we should   expect. Once the plasmodia are resistant enough  to survive, evolving more is a waste of energy,   and is selected against. That makes Behe’s  supposed speed limit slower than the actual   rate of evolution in the examples he’s using,  since he’s lumping the directional and stabilizing   parts of the pathway together, instead of  just looking at the directional selection.   Also, it’s quite amusing to note that if Behe  considers this drug resistance to be impossible   to evolve, it means that he believes in a god who  deliberately bestowed plasmodia with resistance to   our drugs in order to ensure that we continue  to contract malaria. Gee, what a swell guy.  It actually gets even worse than this, because it  turns out Behe didn’t actually look that hard at   these examples that supposedly don’t show enough  evolution, as he missed some pretty significant   evolution that happened a lot faster than he  says it can. In chapter 7, writing about HIV,   he said “there have been no significant basic  biochemical changes in the virus at all”   and “there have been no reports of new viral  protein-protein interactions developing in an   infected cell due to mutations in HIV proteins”,  and those statements are both flat-out wrong. We   already talked about this example a bit earlier,  but to reiterate, an HIV protein called Vpu   did exactly what Behe says can’t happen.  It evolved two new protein binding sites   involving multiple mutations in the time since  HIV-1 jumped from chimps into humans in the   early twentieth century, in order to deactivate  human tetherin. This required as many as seven   new mutations to produce a novel function. I want to be extremely clear here: this is   undeniably a direct refutation of Behe’s  argument in Edge. It’s exactly the kind   of thing that he claims would take too long  to have evolved. He actually coined a rule,   the “two-binding-sites rule”, which states  that the probability of two new protein-protein   binding sites evolving would require more  cells than have ever existed on earth,   and is therefore “beyond the edge of evolution”.  But here we have exactly that feature appearing   in HIV. And HIV has only existed for about a  hundred years, which means the “two-binding-sites   rule” does not exist, and neither does  Behe’s supposed evolutionary speed limit.  This little problem with Edge of Evolution  was first pointed out by an at-the-time   graduate student and blogger, now Dr. Abbie Smith,  on her blog, ERV, as in “endogenous retrovirus”,   since Smith is an expert in the very thing  Behe was spouting off about. Behe’s response   was dismissive of then-student Smith’s argument,  involved just a wee bit of casual sexism with   an allusion to Mean Girls, and misrepresented  the novel traits in HIV by describing them as   “gumming up the works”, rather than as new  specific protein-protein binding sites.   In a subsequent exchange with Dr. Ian Musgrave,  Behe defended comparing a young woman to Mean   Girls, waffled a bit on what the argument was  actually about, and ultimately conceded the point,   saying: “Yes, I’m perfectly willing to concede  that this does appear to be the development of   a new viral protein-viral protein binding site,  one which I overlooked when writing about HIV.”  So to review, Behe got just about everything on  this wrong. First he said HIV has evolved no new   biochemical traits. Then he said Vpu isn’t a good  example because it’s just “gunking up the works”,   which is wrong because it actually evolved several  new specific binding sites. Then he conceded the   point, which, for those keeping score, completely  invalidates his argument in The Edge of Evolution.  We are just about done here, but to be  thorough, let’s finish off Behe’s major works.   His third book was 2019’s Darwin Devolves.  The central thesis of this book is that,   sure, new traits can evolve, and sometimes do  so fairly rapidly, but the vast majority of new   traits are actually reductive or destructive  in some way, and more broadly, since,   according to him, most new traits that evolve are  actually due to some kind of loss of function,   such as drug resistance in bacteria due to  the gene for a receptor protein being deleted,   large-scale evolutionary changes are impossible. If Behe had bothered to look at some of the most   well-documented examples of evolutionary change,  he’d know that this isn’t the case. In fact, he   should know this is nonsense based on examples he  himself described in his other works. For example,   in Edge of Evolution, Behe describes a hemoglobin  allele called HbC-Harlem, which, similar to the   allele that causes sickle cell disease, confers  resistance to malaria, with, as Behe describes,   “the advantages but not the drawbacks of sickle”.  He also describes the aforementioned Cit+ trait   in the E. coli of the LTEE, which has a new  metabolic option, without compromising any   existing pathways, literally debunking  himself yet refusing to acknowledge it.   He has a talent for referencing science that  debunks him but twisting it to pretend that   it supports him, like he does here for the LTEE. And the long and the short is that 30 years after   his, or 25 years after his experiment began, he  tracked down about three dozen different mutations   that helped the bacterium grow faster or  compete in its environment. And they were all   ones that either destroyed or at least  degraded the genes in which they occurred.  This is just a lie. We talked about how the  Cit+ trait arose, and it is not through any   degradation. Some of the traits are due to  degradation, because of the nature of the   experiment. Because the flasks are shaken as  they incubate, this moves the bacteria around,   so they don’t need flagella. So losing them is  advantageous energetically, and other things   of this nature. Yes, it is possible for the  deactivation of a gene to be selected for,   and some such cases occurred in this experiment.  But not dozens, and certainly not “all”,   as he claims, as we have explained with the  Cit+ trait. The experiment shows that novel,   beneficial, irreducible traits can evolve  rapidly. So he is lying. And he knows it.   But this false narrative is just too perfect to  pass up. It’s a way for him to feign charity,   describing certain legitimate phenomena in  evolutionary biology, but cherry-picking in   a dishonest manner that allows him to pretend that  large-scale evolution can’t happen. This is what   most of his current talking points sound like. In short, helpful mutations are not a DNA upgrade.   Getting a newer smartphone is  an upgrade. It’s more helpful   because it has completely new features. But  mutations don’t install new features in DNA.   They only make changes to existing ones. A  mutation is more like disabling your GPS.   It may help you save your battery,  but it doesn’t add a new function.   We are told that random mutation is the  main driver for evolutionary change,   and that evolution is responsible for lower forms  being upgraded to higher ones. Yet the latest   scientific results show new species are made by  breaking genes. By devolution, not evolution.  Again, just straight lies. There is no  “devolution”. As you are likely beginning to see,   creationists have a sadistic obsession with  painting evolution as some kind of destructive   force, but to do so they have to ignore  a long and expanding list of completely   new genes rapidly evolving everywhere we look.  There are many papers like this one examining   the concept of de novo genes. These are new genes  that originate when previously non-expressed DNA   becomes protein coding and preserved via  natural selection, due to promoters arising   near previously non-coding sections of DNA. So  we have a section of DNA that was not a gene,   which is now a gene. New genes. We used to think  this was rare, but once we figured out how to look   for them, by identifying protein-coding sequences  that aren’t protein-coding in all the most closely   related species, we started finding them all  over the place. Primates, insects, fungi, plants,   you name it. More are being found all the time.  Here’s a paper showing de novo multicellularity   for a species of algae in response to predation.  You can use this example anytime a creationist   asks you how multicellular organisms first  evolved and watch them become speechless.  So again, the point is that Behe and pals need to  deny any non-Darwinian mechanisms of evolution,   because they love to pretend that the field  hasn’t progressed in 150 years. In actuality,   beyond the examples just cited, many or most major  evolutionary events tend to occur through the   duplication of genes or even entire chromosomes,  which can then diverge from the original copy   to accumulate mutations and produce totally new  proteins with novel functions, without losing any   existing functionality from the original gene.  This can alter cellular and metabolic activity,   and if these new genes guide embryonic  development, there can even be significant   changes to the body plan. This pageantry about  a cell phone losing functions to save energy   is just lies disguised as something relatable,  which is all that apologists can do.  But beyond all this, perhaps the best  evidence that Darwin Devolves is nonsense   is that Behe had to flat out lie to defend  it. In a discussion of Behe’s treatment of   documented adaptations in polar bears, Dr. Nathan  Lents pointed out that Behe did not accurately   represent the findings of a paper he cited, when  he claimed that virtually all adaptations that   polar bears have to their arctic climate are  actually damaging in some way. In response,   Behe provided a table from that paper, showing  that all the documented mutations are either   “possibly damaging” or “probably damaging”. But  he must have thought nobody would check up on him,   since Dr. Lents showed that Behe sneakily omitted  two columns and many rows, and the omitted data,   unsurprisingly, tell a very different story.  Here’s the actual table from the paper,   supplemental table S7. Whoops. Apart from the two  restored columns, look at all those rows that say   “benign”, meaning not harmful in effect. You  know, the exact opposite of what Behe is claiming?   There sure are a lot of them, huh? I  wonder how he could have missed those?  This is clearly not an accident. Behe is  deliberately misrepresenting scientific research   to support his baseless claims. He chopped up  the table to lie to his readers so they would   think his book isn’t trash. The data have to be  manipulated because he doesn’t have a leg to stand   on. Then again, can anyone really be surprised  that he’s a liar? I’ve never come across a single   proponent of creationism who isn’t one. From the  lowliest preacher, to the tiny handful with actual   scientific credentials, and everyone in between. So in summary, although Behe was a real scientist,   who at one point did real work in the field he  is discussing, a truly rare thing for anyone   affiliated with the Discovery Institute, he  is not above promoting pseudoscience like   intelligent design. He does this with bad science  like “irreducible complexity”, but also with lies   and misrepresentations, like using “Darwinism”  as an epithet for all of evolutionary theory,   doctoring data, and promoting the fiction that ID  isn’t just creationism with a new name. Of course,   if he wanted to show that ID is real science  worth considering, he knows how to do that.   He knows how peer review works and how  real scientists try to persuade each other.   But instead of doing that, he writes crappy  books on topics he doesn’t understand   that are full of bad arguments, incorrect  information, and deliberate disinformation,   all to further the agenda of a propaganda mill  actively trying to pull us back to the dark ages.   Special thanks go out to Dan Stern  Cardinale, an evolutionary biologist   who helped me prepare this video. He runs a  great debunking channel called Creation Myths,   so if you enjoyed this debunk I highly recommend  checking that out for lots more content like this.  So that’s it for Michael Behe, the fading  star quarterback of intelligent design.   If you previously found him persuasive, hopefully  now you don’t. And if you know anyone who   regularly brings up his doctrine, like irreducible  complexity, you now know what to tell them.   But we still have more DI frauds to  deal with, so I’ll see you next time.
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Channel: Professor Dave Explains
Views: 366,679
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Keywords: michael behe, discovery institute, irreducible complexity, biology, evolution, edge of evolution, darwin devolves, darwin's black box, intelligent design, creaitonism, darwinism, ian musgrave, abbie smith, nathan lents, josh swamidass, gunter bechly, ken miller, kitzmiller v dover, bacterial flagellum, recombination, waiting time problem, evolution news, lenski LTEE
Id: MVQGQz-0Xeo
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Length: 52min 23sec (3143 seconds)
Published: Fri Sep 23 2022
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