Exposing Discovery Institute Part 2: Stephen Meyer

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Stephen Meyer is very credible, this will be interesting

👍︎︎ 1 👤︎︎ u/SelfAugmenting 📅︎︎ May 14 2022 🗫︎ replies

The Kitzmiller v Dover decision is worth reading. The judge eviscerated ID. Their degree of dishonesty is astounding, but creationists in general cannot be trusted. I still laugh at the cdesign proponentsists example, an actual in situ transitional fossil where ID proponents did a shitty search-and-replace job on the creationist book Pandas and People.

My only hope on the subject of creationism is the ongoing gradual decline in religiosity in the US. Creationists don't come around, don't get better. They have the truth, so what would they have to learn from skeptics and god-deniers? It's apparently very difficult (though not impossible) for creationist and conservative believers to move to more liberal churches. Because they're already preconditioned to consider those more liberal (theologically or politically) faith communities to be "dead churches."

👍︎︎ 1 👤︎︎ u/mhornberger 📅︎︎ May 15 2022 🗫︎ replies
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Hey everyone, we’re back with  Part 2 of this little series,   in which I’m exposing all of the clowns at the  Discovery Institute for the charlatans that they   are. In Part 1 we demonstrated that Casey Luskin  is a fraud and a liar beyond any shred of doubt.   In Part 2 we will address Stephen Meyer,  another pusher of intelligent design   hiding behind a thin veneer of  legitimacy. What’s he all about?  Meyer is one of the cofounders of the DI, and  currently serves as program director for its   “center for science and culture”. As a cofounder,  he was intimately involved in ¬¬the creation   of the so-called “wedge document”, an internal  document that was leaked to the internet in 1999   and explicitly states their religious  agenda, with words AND pictures,   as they chose to put Michelangelo’s Creation of  Adam right on the cover. Subtle. That’s right, the   seriously-all-about-science-and-totally-not-about-religion  institute is, surprise surprise,   religiously motivated by their own secret  words. This document is horse manure right   from the first sentence, which is a lie about  Western civilization being built upon humans   being created in god’s image, and then a list  of things they want to give religion credit for,   which quite honestly have only been possible  once religion loosened its grip on humanity.   There is the typical tripe about how without fear  of a vengeful god we would all be savage murderers   stealing and raping 24/7, failing to mention  all of the genocides that have been performed   in the name of one god or another, and there’s  Meyer’s name with a bullet at the end of page 1.   On the next page, there are only two governing  goals listed for the DI. The first is to “defeat   scientific materialism”, that idiotic buzzword  we deconstructed in part 1, and the other is   to “replace materialistic explanations with  a theistic understanding”. In other words,   to replace science with god. The last of these  twenty year goals is to see “design theory”   penetrate our religious, cultural, moral, and  political life. It can’t be made any clearer than   this. Religion everywhere, including government.  Anyone who is convinced that the DI does not have   a religious and political agenda is a sucker. Their pathetic attempt at damage control as a   result of this leak was to craft a response called  “The Wedge Document: So What?”, like an insolent   teenager who got caught pulling the fire alarm.  This response basically consists of the DI acting   shocked and appalled by people making claims that  the document says things that it factually says.   For example, right in the second paragraph:  “One group claimed that the document supplied   evidence of a frightening twenty-year master  plan to have religion control not only science,   but also everyday life, laws, and education.”  Oh my, wherever would anyone get that wild idea?   I’ll spare you the details of the 18 pages of  desperate backpedaling, but it’s linked below   and a laugh riot, especially the parts where they  pretend “materialism” is responsible for all the   heinous acts that have historically been the  exclusive domain of religion. Oh, sweet irony.  Anyway, as we elucidated in Part 1, the immediate  goal of Meyer and the rest of the DI is to get   religion taught in schools. This was formally  attempted in the Kitzmiller v Dover debacle of   2005, in Pennsylvania. This was their first  direct attempt to fulfill their agenda and   they failed miserably, as the court ruled that  intelligent design is religion, not science,   and the mandate was deemed unconstitutional. While  they won’t formally admit that they want religion   taught in science class, even though it’s clear as  day, they certainly won’t admit to being motivated   by a shift toward theocracy and a reunification  of church and state. Their response to the wedge   leak says they can’t believe they have to say it,  but they don’t want that nasty, nasty theocracy.   Honest! But this too is a hollow claim. We can see that by Meyer’s own admission,   most of their funding comes in the way of enormous  donations from wealthy Christian fundamentalists,   who in their own words, want to see “the total  integration of biblical law into our lives”,   and who abide by “the infallibility of the  Scipture”. These are the types the DI answers to.   Churchy McMoneybags. If the Christian  equivalent of Sharia law is what they   want to get for their money, you have to  wonder why they’re giving it to them, hmm?  So, with everyone up to speed on precisely what  the DI really is, let’s dig into Meyer and his   pseudoscience. What’s his background? With a  bachelor’s in physics and earth science as well   as a master’s and PhD from Cambridge in philosophy  of science, one might presume that he has a firm   grasp on the scientific process. But alas, his  allegiance is not to science, as is evidenced   by his primary output, his books, the medium of  choice for those who are allergic to peer-review.   “Signature in the Cell” attempts to argue that  the structure of the cell points to intelligent   design. “Darwin’s Doubt” says the same regarding  the Cambrian explosion. And most recently, “Return   of the God Hypothesis” recycles old talking  points and rounds out the trifecta of trash.   With so much rubbish to address, I’ll be focusing  on just two of his most favorite arguments   and demonstrating that they constitute a  deliberate attempt to misrepresent science.   I’ll be staying away from arguments regarding  the origin of life since I already covered that   very neatly in my response to James Tour. Again,  if any fans of the DI haven’t seen that content,   I implore you to finally check those out  when you’re ready, as they’re quite thorough.   But for now, let’s move on to the fossil record,  since it’s something all of the DI folks seem to   be having a little trouble with. Here’s a snippet  from “Stephen Meyer Takes on Darwin’s Tree”.  Because what we see in the fossil record, in  particular when we’re looking major innovations   in biological form and structure, is the  abrupt appearance of such major innovations   where in each case… those new biological forms  are lacking any discernible connection to similar   forms in the lower sedimentary strata. So you  get an abrupt appearance of a new form of life,   usually persisting through the fossil record  with some slight variation but the basic form   remaining static over long periods of time,  and then either the form going extinct or   persisting right up to the present. We don’t  see the gradual morphing of form from one major   type of organism to another that is described by  Darwin’s tree of life and predicted on the basis   of the action of his mechanism of natural  selection and random variation slash mutation.  Ok, so this quite nicely sets up the main strategy  of folks like Meyer. Biologists say that evolution   involves gradual change, so we should see the  gradual change everywhere in the fossil record,   and we totally don’t at all, so evolution  didn’t happen. This is a blatant denial of what   is contained in the fossil record, coupled with  the hope that the viewer will not lift a finger   to check and just take his word for it. There are  countless examples of slow, gradual morphological   change in the fossil record. From fish to  tetrapods, from amphibians to reptiles to birds,   from land mammals back to sea  mammals like whales and dolphins,   from early hominids to humans as we discussed in  Part 1, and countless others. One could fill up   an entire semester of undergraduate study simply  by discussing and categorizing these specimens.   To pretend they don’t exist is science denial,  plain and simple. Of course, we do not have   specimens for every single species that has ever  existed, because of how fossilization works. It’s   a relatively rare occurrence. Some short-lived  species may have never been fossilized,   and there are undoubtedly plenty of fossils  that we have not yet found or may ever find,   two facts which Meyer himself summarizes  with the term “The Artifact Hypothesis”,   without bothering to acknowledge the  validity of these two limitations,   choosing instead to lie about something called the  Doushantuo shale, which contains organisms we will   discuss a bit later. But with the overarching lie  well-understood, let’s dig into some of the more   specific claims and compare them to the scientific  literature to show how they are clearly false.   When asked for examples of organisms showing up  very suddenly in the fossil record, he said this.  There are many examples of the abrupt appearance  of new forms of animal and plant life in the   fossil record. I wrote a book about one of the  greatest of those events called the Cambrian   explosion, which is an event about 520 to 530  million years ago, where the first animal forms   arose abruptly in the fossil record with no  discernible connection to similar forms in the   lower Precambrian strata. It’s really dramatic. So, he may chalk this up to a misspeak,   but he clearly said that the first animal  forms appeared in the Cambrian explosion.   This is objectively wrong not just according  to science, but even Meyer’s own work.   He points out in chapter 4 of 2013’s Darwin’s  Doubt that sponges and the mollusk-like Kimberella   are known from Ediacaran strata. He is well aware  that animal life predates the Cambrian explosion.   This event was a diversification of animal life,  not its origin. Second, claiming that the Cambrian   explosion lasted from 530 to 520 million years  ago is wrong too, which he doesn’t even clearly   state as a range rather than an approximate  singular date, to deliberately maximize confusion.  According to the 2011 paper “The Cambrian  Conundrum: Early Divergence and Later Ecological   Success in the Early History of Animals,” we  read as follows. “The earliest skeletal fossils   occur in the latest Ediacaran, but the first  appearance of an array of plates, spines, shells,   and other skeletal elements of bilaterian affinity  begins during the early Cambrian Fortunian Stage,   541 to around 530 Ma”, where Ma stands for  “mega-annum”, or millions of years ago.   Reading further, “Although many new groups have  been described over the past decade, the pattern   of diversification of both body fossils and  trace fossils has remained largely robust:   A recompilation of the first occurrences of all  metazoan phyla, classes, and stem-classes (extinct   clades) of equivalent morphologic disparity shows  their first occurrences in the latest Ediacaran   (by 555 Ma), with a dramatic rise over about 25  million years in the first several stages of the   Cambrian, and continuing into the Ordovician.” So, the Cambrian explosion itself is just the   rapid appearance of bilaterian phyla in the early  Cambrian, but this is already at least 25, not 10,   million years, lasting from 555-530 million years  ago. Given that this study was published before   Meyer’s book, and well before this 2021 video, he  is either ignoring this information or unaware of   it, neither of which looks good for someone  posing as an expert. Beyond this, more recent   research has changed this picture substantially. A  2018 paper titled “The two phases of the Cambrian   Explosion” argues that the Cambrian encompassed  two separate radiations, one of stem lineages   from 542-513 million years ago, and one of crown  lineages extending from 513 million to the start   of the Great Ordovician Biodiversification  Event about 485 million years ago.  We will elaborate on what we just said in a  moment, but we should first quickly summarize   the dishonesty in how ID proponents portray the  Cambrian explosion. They exploit the suddenness   that is implied by its name in order to  pretend that enormous numbers of species   showed up in an unimaginably short period  of time, allowing the uneducated viewer to   presume that this means almost instantaneous, as  though they emerged from a puff of divine smoke.   In actuality we can now see that we are talking  about around 70 million years. Although relatively   brief for geologic timescales, hence the colorful  name, for biological organisms this is quite a   long time, plenty long enough for the impressive  diversification to take place given the intense   evolutionary pressure of many animal forms  suddenly in direct competition for resources.  Now, let’s get back to the previous point  regarding lineages to further highlight Meyer’s   dishonesty. We need to define some terminology.  Meyer is fond of saying that various animal phyla   appeared in the Cambrian without predecessors, but  what is a phylum in the first place? Meyer defines   the term phylum in chapter 2 of Darwin’s Doubt as  “the highest (or widest) categories of biological   classification in the animal kingdom, with each  exhibiting a unique architecture, organizational   blueprint, or structural body plan.” While that sounds fine at face value, the   2000 paper “A critical reappraisal of the fossil  record of the bilaterian phyla” points out why   this definition is problematic. Reading, “Claims  that the phyla are characterized by particular   types of ‘body plan’ features which putative  super-phyletic groupings do not possess thus seem   to be based on an artifact of how we classify  groups of animals: if such ‘super-phyletic’   features were readily identifiable, the larger  grouping would itself probably be called a phylum,   as it would be recognized to be phylogenetically  unified. As the level at which this ignorance of   relationships becomes important is likely to  vary between groups, the cladist’s standard   criticism that phyla (and other such ranks) should  be positively discouraged on the grounds that they   engender spurious comparisons between members of  the same ‘rank’ seems to be valid.” That was a bit   wordy, so to simplify, we are saying that, phyla,  like other taxonomic ranks, are largely arbitrary.   So, we should concern ourselves less with whether  or not some animals fall into a particular phylum   and more with whether the features they  possess are explicable under evolution.   As we will see, this is definitely the case. This paper also defines “body plan”   as a “set of features plesiomorphically  shared by extant taxa in a monophyletic   clade.” That word plesiomorphically just refers  to traits that are shared by all the members of   a group but are not unique to that group. So,  while this adds objectivity to our definition,   it also means we can’t necessarily equate a phylum  with a particular group of organisms that share   a body plan. For example, insects share a body  plan that is a modified version of the common   arthropod body plan. All of the features shared  by arthropods are present in insects, but not   all the features shared by insects are present  in all arthropods, such as wings and six legs.   This brings us to two other terms we need  to be familiar with before proceeding,   those being “crown” and “stem”. This paper  defines both: “The crown group of a phylum   consists of the last common ancestor of all living  forms in the phylum and all of its descendants;   the stem group consists of a series of entirely  extinct organisms leading up to the crown group   away from the last common ancestor of this phylum  and the most closely related phylum.” To take   one example, trilobites, chelicerates, myriapods,  crustaceans, and insects are all crown-arthropods,   but the Cambrian forms Opabinia and Anomalocaris  are stem-arthropods because they lack features   diagnostic of the crown group, like a sclerotized  exoskeleton, tagmosis, and specialized appendages.   Some might even call them transitional species. At any rate, this claim that the animals of the   Cambrian have no predecessors in the Precambrian  is one of Meyer’s central theses. Here he is   making this same claim in a PragerU video called  “Evolution: Bacteria to Beethoven”, since one   propaganda outlet doesn’t seem to be enough for  him. And with an image of a bacterium right next   to a primate, we can tell we are going to get  some Kent Hovind level dishonesty on this one.  First, the Cambrian explosion. A weird and  wonderful thing happened 530 million years ago.   A whole bunch of major groups of animals, what  scientists called the phyla, appeared abruptly   within a geological short window of time. About  ten million years. These novel animal forms   exhibiting prototypes of most animal body designs  we see today, emerged in the fossil record without   evidence of early ancestors. Did you catch that? Yes, Stephen. We caught you lying on the internet.   It’s not that shocking. Let’s now properly examine  Cambrian radiation to thoroughly expose one of   Meyer’s biggest and most persistent lies. This  will get a little technical, but bear with me,   we need to see how thoroughly he contradicts real  science. The earliest current evidence of animals   dates to about 650 million years ago in rocks from  Oman. This evidence comes from molecules called   steranes, specifically ratios of certain steranes  unique to sponges and a few other eukaryotes.   Researchers have concluded after some debate  that the ratios of those particular steranes   and the varieties present are indicative  of sponges instead of algae or protists.   I’ll link to the relevant studies for those  interested in digging into this research,   but in short, researchers have tended to regard  the presence of those steranes starting at about   650 million years ago as the earliest evidence  of animals. Following the Cryogenian Period,   the Ediacaran Period extended from 635-541  million years ago. It is in this period,   not the Cambrian, that we find the first animal  body fossils. From 635-590 million years ago,   the evidence of animals includes putative  cnidarians like Lantianella, and phosphatized   animal embryos. These embryos too have been the  subject of extensive debate since they were first   discovered in the 1990s. Interestingly, their  first description pinned them as animal embryos,   but later studies had regarded them as potentially  being protists, algae, or even giant bacteria.  A recent study investigated a large number of  these potential embryos and found that at least   some of them are developmentally complex enough  to be animal embryos, including Megasphaera,   Caveasphaera, and Helicoforamina,  rejecting algal and protistan assignment.  Acritarchs also attained some evolutionary  innovations at the start of the Ediacaran,   developing conspicuous ornamentation possibly due  to coevolution with the newly evolved eumetazoans.   Again, some definitions might help:  Eumetazoa includes all animals that   aren’t sponges. Sponges are the most basally  derived animals, and Eumetazoa encompasses   ctenophores, placozoans, cnidarians, and then  all the bilaterians. More information on these   clades can be found in my zoology series. Interestingly, experimental evidence has   revealed that both sponges and ctenophores  have low oxygen requirements, which makes   sense given that only the ocean surface  was oxygenated until the middle Ediacaran.   Finally, 571 million years ago, we  find the first macroscopic communities.  The organisms from 571-541 million years  ago are lumped into three “assemblages”   or recurrent community compositions: the  Avalon from 571-555 million years ago,   the White Sea from 560-551 million years ago,  and the Nama from 555-541 million years ago.   It is from these assemblages that  the classic Ediacaran biota hail,   also known as Vendian biota. The affinities of  these organisms, or compatibility with certain   taxa, are extremely important for understanding  the Cambrian explosion. When first described in   the 1940s, the mysterious Ediacarans were written  off as a failed early experiment in evolution.   Indeed, this was still the case when  Stephen Jay Gould wrote the popular book   Wonderful Life in the late 1980s, which is  why ID proponents love to quote Gould, because   they pretend his eminence in the field weighs  more than the obsolescence of his quotations.   At that time they were thought to be  independently multicellular protists,   fungi, or lichens, while homologies with animals  were few and far between. As time has gone on,   better technology has improved our ability to  understand these organisms, and a wealth of new   fossils has radically changed the picture. As a  2016 paper notes, “Further, Ediacaran candidate   animals were probably dominated by deep stem-group  representatives of various modern clades. Thus,   perhaps not surprisingly, the phylogenetic  interpretation of putative Ediacaran animal   fossils is not straightforward; many of them  have suggestive but not definitive characters   for phylogenetic placement, presenting tantalizing  but frustrating cases for animal affinities.”  It has also been claimed by some,  like paleontologist Gregory Retallack,   that Ediacaran communities were terrestrial rather  than marine, and that some of the more famous   Ediacarans like Dickinsonia were lichens. Both  of these conclusions have been heavily disputed.   The terrestrial Ediacaran hypothesis  contradicts, according to one paper,   “abundant data collected during decades of  detailed sedimentological and geological   research by numerous international authors.” The earliest of these assemblages, the   Avalon assemblage, is dominated by the sessile,  frondose, fractal rangeomorphs, such as Charnia   and Fractofusus; frond-like arboreomorphs like  Charniodiscus; and strange disc-like organisms,   such as Cyclomedusa. Their affinities have  been extensively debated, from algae to fungi   to stem-animals to crown-animals. Recent  work has pinned the bizarre rangeomorphs as   stem-eumetazoans. According to a 2021 paper,  “Charnia masoni maintains differentiation of   elements with concurrent axially delineated  inflation, exhibits evidence for transitions   in the primary developmental mode, and is  compatible with indeterminate growth, and the   form of the organism is regular and predictable.  This combination of characters is only otherwise   seen within the Metazoa. Algae do not display  a conserved form, and fungal fruiting bodies   do not display the maintained differentiation  of new elements. Therefore, using these data   in tandem with a large, multicellular  organization, we conclude that there is   no justification for considering an affinity for  Charnia outside the animal total group.” If true,   then arboreomorphs could also be stem-eumetazoans.  Another very interesting Avalonian is Haootia   quadriformis from 560 million years ago, which  has been convincingly shown to be a cnidarian,   the same clade containing modern jellyfish. Next, many of the famous Ediacarans hail from   the White Sea assemblage, such as Tribrachidium,  Dickinsonia, Ikaria, and Kimberella. First,   Tribrachidium is a strange organism plausibly  interpreted as another stem-eumetazoan, being a   member of the extinct phylum Trilobozoa. It was  evidently a sessile, benthic, suspension-feeder   with tri-radial symmetry. Second, Dickinsonia is  perhaps the most famous of the Ediacarans, and   despite a long contentious history, ichnological,  developmental and biomarker evidence have argued   strongly in favor of stem-bilaterian affinity.  As Dickinsonia is a member of the extinct phylum   Proarticulata, this conclusion applies equally  to the whole clade. Third, Ikaria is a recently   discovered bilaterian from South Australia.  According to the paper that described it,   “We find that the size and morphology of Ikaria  match predictions for the progenitor of the trace   fossil Helminthoidichnites, indicative of mobility  and sediment displacement.” Lastly, Kimberella is   another historically contentious fossil with  affinities ranging from cnidarian to mollusc.   More recent analyses have tended to settle  on stem-mollusc or stem-spiralian affinities,   the latter of which is the clade encompassing  molluscs, annelids, rotifers, brachiopods,   and many other familiar invertebrates. The final Ediacaran assemblage is the Nama, and   evidently, an extinction occurred at the beginning  of this period, drastically reducing biodiversity.   Following the extinction event, we find fossils  like Cloudina, Yilingia, and Namacalathus.   Cloudina is a tubular, biomineralized animal that  has recently been argued to be an annelid based on   the possible remains of a digestive tract found  in some specimens. Some relatives of Cloudina,   collectively termed cloudinomorphs, have been  argued as cnidarians, so “cloudinomorphs” may   not actually represent a single monophyletic  clade. More fossils are needed to confirm this.   As for Yilingia, this segmented bilaterian is  proposed to be either an annelid or panarthropod,   the clade containing tardigrades, velvet worms,  and arthropods. The latter affinity is evidenced   by each segment bearing three lobes, similar  to trilobites. Third, pyritized soft tissue in   Namacalathus appears to support assignment as  an early relative of brachiopods and bryozoans.  At this point, it’s completely ridiculous to  even imply that there are no animals in the   Precambrian. There are a host of fossils that can  easily be interpreted as animals preceding the   Cambrian, giving no support to Meyer’s repeated  claim that animals just appeared out of nowhere.   One has to presume that Meyer is aware of most  or all of the research I just cited, and have   linked below, and is deliberately ignoring it.  But, there’s another issue here that goes deeper   than merely pointing out the existence of animals  in the Precambrian that Meyer tries to hide. It is   that the evolution of Ediacaran animals follows a  gradual stepwise pattern, completely in line with   evolutionary principles. When the Ediacarans  first show up around 570 million years ago,   like the rangeomorphs, they are all soft-bodied,  but between 560 and 550 million years ago,   the first organic-walled, non-biomineralized forms  appear, such as Corumbella and Shaanxilithes.   Finally, around 550 million years ago, the first  hardened, biomineralized animals showed up,   like Cloudina, collectively called the “small  shelly fauna.” Along with these organisms, we   see a proliferation of trace fossils, indicative  of various motile animals. And though most of   the bizarre Ediacarans perished by 541 million  years ago, a select few, such as Cloudina and   Swartpuntia, straggled into the early Cambrian,  indicating an undeniable continuity of faunas.  Since that was a lot of information, it’s worth  pausing for a moment before diving into the   Cambrian radiations to think about just what ID  proponents mean to propose instead of evolution   for all of these organisms. Did the designer  create the first eukaryotes separately from   those of the Cambrian? Did the designer design  successive related or unrelated assemblages   piecemeal throughout the Ediacaran? Are any of  the Precambrian animals related to any of the   Cambrian ones? Is the Precambrian Cloudina related  to the Cambrian Cloudina? How do we differentiate   designed organisms from non-designed? The simple  fact is that there is no intelligent design model   to explain the Precambrian animals, or as we  shall see momentarily, the Cambrian either.   I repeat. There is no model. There is nothing  to test, and no attempt to correlate or explain.   They simply ignore all the data that contradicts  the desired conclusion and say “god did it”. This   is why intelligent design, truly, fundamentally,  undeniably, isn’t science. Not because of   any “materalist agenda”, but because it  doesn’t do the things that science does.  Moving forward, given all of this Precambrian  preamble, how does this contribute to our   understanding of the Cambrian itself? The last  of the soft-bodied and organic-walled Ediacarans   fizzled out in the early Cambrian, and this was  likely due to competition with the newly evolved   biomineralized animals. As a 2016 paper argues,  these biomineralized animals “were equipped   with innovative adaptations of active feeding  modes and sediment restructuring capabilities,   biomineralized armament against predators,  generalist and opportunist adaptability to varying   substrates, sexual and asexual reproduction for  enhanced dispersal, resilience to environmental   disturbance, and presumably high fecundity and  rapid achievement of sexual maturity.” The first   evidence of predation in the form of boreholes in  Cloudina fossils indicate that there were novel   selective pressures in the terminal Ediacaran,  which likely helped drive evolutionary arms races   between predators and prey. Furthermore,  bioturbation of sediments, meaning disturbance of   sedimentary deposits by living organisms, expanded  vertically in the late Ediacaran, disrupting the   cyanobacterial mats upon which Ediacaran organisms  grew, which also likely led to their extinction.  As for environmental factors, oceanic oxygen  levels continued to rise into the Cambrian,   significantly lifting size restraints  on organisms. In addition, greater   oxygen levels also allowed for longer food  chains, and thus highly complex food webs.   A general rule is that 10% of the  total energy stored in biomass   is available from each trophic level to the  next, on the so-called ecological pyramid.   Respiration with oxygen is the most  efficient way to convert biomass into energy,   so more oxygen means more trophic levels and more  complicated ecosystems. Indeed, the Cambrian is   the first time we see complex ecosystems with  many styles of feeding, including apex predators.   Some researchers have pointed to modern  polychaete feeding-ecology in support of this.   When oxygen levels are higher, there are more  predatory polychaetes. Analogously, this too   would have contributed to the evolutionary arms  race in the early Cambrian, and this immaculately   sets the stage for the Cambrian explosion  itself, which occurred in a series of steps.  The trace fossil record of the early Cambrian  is indicative of a major diversification event,   as indicated by ichnotaxa, or taxa based on  fossilized remains. Burrowing abilities in   the latest Ediacaran are all horizontal, with the  first vertical examples appearing at the start of   the Cambrian, along with arthropod trace fossils.  The global maximum of ichnogenera rose from 10 to   42 across the Cambrian boundary, but the deepest  vertical burrows only dug a few centimeters into   the substrate. This first age of the Cambrian  is called the Fortunian, and it lasted from   541-535 million years ago. The second stage  of the Cambrian, also called the Tommotian,   lasted from 535-525 million years ago, and  the global maximum of ichnogenera rose to 43.   Bioturbation markedly increased during this time,  as organisms were burrowing deeper than they had   been previously. Global ichnodiversity  rose again to 55 genera in the next age,   the Atdabanian, which lasted from 525-514 million  years ago, and the behavioral complexity indicated   by trace fossils was greater compared to the  preceding Tommotian. Cambrian stage 4 lasted from   514-510 million years ago and showed no increase  in ichnodiversity or behavioral complexity.  As a 2014 paper concludes, “The  initial diversification (Fortunian)   is coincident with the appearance  of the first sediment bulldozers,   but preceded the establishment of  infaunal suspension-feeder faunas   that were ecosystem engineers of paramount role  (Cambrian Stage 2). In turn, the rapid increase   in depth and extent of bioturbation associated  with these suspension-feeding communities may   have triggered another diversification  event of biogenic structures that took   place during Cambrian Stage 3, and involved the  appearance of new behaviours by deposit feeders.   Capture of organic particles by suspension feeders  allowed enrichment of organics by biodeposition,   promoting diversification of infaunal deposit  feeders. Therefore, infaunal suspension feeders   may have been ecological drivers of  the Cambrian Stage 3 diversification   phase of biogenic activity, representing  a dramatic case of ecological spillover.”  What this picture indicates is that a big chunk  of the Cambrian explosion occurred in a stepwise   fashion over the course of about 27 million  years, from 541 to 514 million years ago. Clearly,   the gradual nature of this event speaks to  evolutionary causes, not supernatural ones, and we   even have firm ecological explanations for these  steps, as we just discussed. This will become   even more apparent with the next few examples. A 2018 paper broadly describes the two phases   of the Cambrian explosion as indicated by  body fossils. The first phase lasted from   560-513 million years ago and was dominated by  non-bilaterians, such as poriferans, ctenophores,   and cnidarians, as well as stem-bilaterian  lineages. Notably, stem-lophophorates, like   hyoliths and tommotiids, as well as stem-molluscs  like halkieriids, wiwaxiids, and helcionelloids,   comprise most of the spiralians of this period.  At 513 million years ago, an extinction event   occurred called the Sinsk extinction, and  this wiped out many of the stem lineages,   allowing the crown lineages to predominate.  Crown group brachiopods, bivalves, and gastropods   diversified in the second phase, which  lasted from 513-485 million years ago,   followed by the appearance of cephalopods  and bryozoans near the end of the period.  Okay, let’s regroup for a moment. I  know that was a lot of information,   and I’m sorry to have to put you through all  that, but it was necessary. Meyer presents   himself as a scholar and academic, and he is able  to do this because he has rehearsed terminology   that is unfamiliar to most people. That’s how  he comes off as an expert. He uses words most   people don’t know and he uses them confidently.  That’s all it takes to trick a lot of people.  But when you compare what he says to the  scientific literature, which he knows almost   no one will ever do, you can see that he’s just  completely full of shit. After looking at dozens   of studies that profoundly contradict everything  he says, it becomes clear that everything about   the Cambrian explosion, from what preceded  it to the actual unfolding of the event, and   the aftermath, perfectly matches what we expect  from evolution. We see the progressive stepwise   evolution of animals where sponges, cnidarians,  and stem-bilaterians show up first, followed by a   diversification of crown-bilaterians. This makes  no sense in the context of intelligent design,   and again, ID proponents do not have a model  of any kind to explain the events of the   Cambrian explosion. All they can do is lie about  science and pretend to poke holes in evolution,   as though that would substantiate any  alternative, scientific or otherwise.  With this information now understood, we can  all resoundingly conclude that Meyer’s book   “Darwin’s Doubt” is complete and utter garbage.  Of course this is old news. Essentially everyone   with relevant expertise who reviewed the book  when it was published said as much themselves,   and of course the DI had their stock responses  ready as damage control. Every scientist who   criticizes it is a moron, or misrepresenting  the book, or didn’t focus on the main points,   it’s just deflection after deflection, like  an abusive gaslighting alcoholic boyfriend.   But this charade should be pretty transparent at  this point. It’s an empty gesture for thoughtless   followers who want any reason whatsoever  to dismiss these criticisms point blank   without a moment’s thought, and have the lowest  standards imaginable for such judgements.  Ok, ready to get back to the science? Moving on  chronologically from the Cambrian explosion, Meyer   lies about every other era he attempts to discuss. But the Cambrian explosion isn’t the only such   event in the history of life. There are many. A  little bit later in the fossil record there is an   event called the Great Ordovician Biodiversity  Event, or GOBE, where there’s a whole slew of   new forms of life that come into existence. And  then as you go up and down the sedimentary column   you find the first winged insects, the  first dinosaurs, the first turtles,   the first birds, the first marine reptiles, the  first flowering plants, the first flowering plants   come into the fossil record in an event that’s now  known as the big bloom, the biological big bloom.   And then another striking event occurs in the  Eocene period where you get the first mammals, and   where there are between 15 and 17 new orders of  mammals that come suddenly into the fossil record,   again with no discernible connection to similar  creatures in the lower strata beneath the Eocene.  Every single one of these claims is flat out  wrong. Let’s take them one by one. First,   the Great Ordovician Biodiversification Event, or  GOBE, was an evolutionary event that occurred in   the period following the Cambrian, which involved  the replacement of the more generalized Cambrian   fauna with more specialized marine fauna that  would be common throughout the remainder of the   Paleozoic Era. GOBE occurred in two phases.  Animal diversity increased somewhat in the   early Ordovician, followed by a sharp increase  in the middle Ordovician. The benefactors of GOBE   include, among others, stromatoporoid sponges,  corals, brachiopods, echinoderms, trilobites,   ostracods, bryozoans, and nautiloids. In fact, the  number of species on Earth tripled during GOBE.   Now, there are a couple of problems for Meyer with  regard to GOBE. First, this event doesn’t fit with   Meyer’s idea of phylum-level intelligent  design. Fine-scale resolutions of animal   evolution during GOBE reveal that the radiation  is merely an extension of the Cambrian explosion.  For the first problem, let’s define some  terminology. “Disparity” refers to the   differences between clades, while “diversity”  refers to variations within clades. Therefore,   the Cambrian explosion was a radiation of  disparity, while GOBE was a radiation of   diversity. Or to use Meyer’s terminology, we  see the origin of body plans in the Cambrian,   and variations on those body plans in the  Ordovician. Remember that according to Meyer,   a phylum equates with a body plan, but no  known phyla originated in the Ordovician.   Instead, the Ordovician saw the evolution  of different species within those previously   established phyla. In some cases, we can see  the step-by-step evolution of certain clades,   such as trilobites. No sign of intelligent design  to be had, and nothing but lies from Meyer.  Continuing, as discussed previously, the second  phase of the Cambrian explosion, in which crown   lineages underwent a radiation of their own,  lasted right up to the end of the Cambrian.   The transition from the Cambrian radiations  to GOBE is so seamless that some papers have   included the late Cambrian as part of it. A 2020  paper defines GOBE as lasting 30 million years,   from 497 to 467 million years ago. Then at the  end of the Ordovician, an extinction occurred,   reducing species diversity, but this was followed  by a radiation at the start of the Silurian. In   other words, we see continuous natural processes  occurring, not isolated supernatural ones.  Next, Meyer said the first winged insects appear  without predecessors. We have to wonder what he   could possibly mean by this. After all, arthropods  evolved in the Cambrian, and the subphylum that   includes insects and their closest six-legged  cousins like springtails is called Hexapoda.   Molecular clocks estimate that the common ancestor  of Hexapoda lived in the early Ordovician,   while the last common ancestor of insects lived  either in the late Silurian or early Devonian.   The earliest insect fossil is a pair of mandibles  called Rhyniognatha from Scotland dating to about   412 million years ago, which is early Devonian  age. Though these may have belonged to a winged   insect, there are no wings associated with the  fossils, and the earliest winged insect fossil   dates to the Carboniferous, some 324 million  years ago. As insects are phylogenetically   nested within the paraphyletic crustaceans,  it also makes perfect evolutionary sense   that fossil crustaceans are found before the first  fossil insects, like those Ordovician ostracods.   Finally, Insecta is a class of  arthropods, so by Meyer’s classification,   insects represent deviations  on the “arthropod body plan,”   not independent body plans, making his claim  of “without predecessors” totally nonsensical.  Of course, the major innovation of insects over  their hexapod cousins is wings and the power of   flight that accompanies them. While we can  all hear a creationist in our heads flipping   out about how wings could suddenly appear,  let’s all learn about this process together.   Developmental analyses of the genes involved  in wing formation have shown that crustacean   orthologue genes called vestigial, nubbin, and  apterous were likely exapted for new purposes,   meaning a purpose other than its original  function. Further, the origin of the wings   involved mergers between different tissues, from  the limbs and abdomen, rather than the wholesale   invention of new tissues. So, the evolution of  wings was about changing and rearranging existing   tissues and genes, not inventing new ones. The story is similar with the first dinosaurs.   Amniotes, or tetrapods whose embryos are  surrounded by an amnion during development,   evolved from reptiliomorphs in the late  Carboniferous about 330 million years ago, and   split into the two clades Sauropsida and Synapsida  shortly thereafter, about 312 million years ago.   The latter contains mammals and their extinct  relatives, whom we’ll return to in a little bit,   and the former contains all so-called “reptiles”  and birds. The common ancestor of lepidosaurs,   which includes lizards and snakes, as well as  archosaurs, which includes crocodilians and birds,   lived in the late Permian about 259 million years  ago, as evidenced by fossils like Protorosaurus.   And the earliest dinosauromorphs, like Asilisaurus  and Lewisuchus, date to the early Triassic.   The first dinosaurs appeared in the late  Triassic about 233 million years ago,   such as Herrerasaurus, Eoraptor, and Saturnalia.   Again, no sign of any intelligent  design, just slow and gradual change.  Turtles have a good fossil record as well. The  evolution of the turtle’s unique morphology is   exquisitely documented in transitional fossils  such as Eunotosaurus, Pappochelys, Odontochelys,   and Proganochelys. Next, at present the  earliest known bird is Archaeopteryx from   the late Jurassic, but this isn’t  even the oldest feathered dinosaur.   Xiaotingia, Anchiornis, and Aurornis predate  Archaeopteryx and show evidence of feathers. Like   the evolution of flight in insects, the evolution  of flight in birds involved a lot of mergers. Many   bones fused to make flight easier, and flight  feathers were exapted from insulating feathers.   By the way, if you want to make a creationist’s  head explode, inform them that scales and feathers   are made of the same protein, keratin, simply in  different arrangements, and that a single point   mutation in certain chickens causes them  to grow feathers where scales should be.  Moving on, “the first marine reptiles” refers to  ichthyosaurs, plesiosaurs, and placodonts, all of   whom evolved in the early Triassic. Yet again,  we have fossils documenting these transitions.   Though ichthyosaurs are fully aquatic,  paleontologists have found early Triassic   sauropsids that are related to them but do not  display such extreme specializations, including   the hupehsuchians and Cartorhynchus. Plesiosaurs  have semi-aquatic relatives, like nothosaurs and   pachypleurosaurs, and there are even transitional  placodonts known, such as Palatodonta.  The origin of the first flowering plants  had actually been a bit of a mystery,   and there is indeed a bit of debate around them.  However, recent analyses of fossil clades like the   Bennettitales, Pentoxylales, and Gigantopteriales  have helped narrow the gap between molecular   and fossil estimates for the origin of flowers.  Just last year, a Jurassic angiosperm was found,   meeting predictions for flower evolution based on  molecular estimates. And yet again, the evolution   of flowers was largely about the modification  of existing structures. All the floral organs:   sepals, petals, androecium, and gynoecium, are  simply modified leaves. More on plant evolution   in my botany series if you’re interested. So we’ve  got transitional species that lead to flowering   plants, all the kinds of insects, reptiles,  amphibians, birds… isn’t it fun to learn about   all the organisms the DI pretends never existed? Finally, Meyer actually said the first mammals   appeared in the Eocene. This is completely,  laughably incorrect. Remember from earlier   that mammals nest within the larger clade of  synapsids, the earliest of which appeared in   the Carboniferous. Stem-synapsid fossils are  known all throughout the Permian and Triassic,   and the first crown-mammals appeared in the  Jurassic. For reference, the Eocene epoch lasted   from 56-34 million years ago, but the crown-mammal  Fruitafossor is dated to 150 million years ago.   Way, way, way off, Steve. Relatives of all  three extant mammal clades, the monotremes,   marsupials, and placentals, are known from  well before the Eocene. This is a really   embarrassing error on his part. Or course we  all know that Meyer isn’t a paleontologist,   but he still should’ve done an ounce of  research before making this absurd statement.  So to finally conclude this very long section  on fossils, Meyer is wrong on all points. He is   lying about an absence of transitional species  for every single era of biological history he   opens his mouth about, and beyond this he provides  absolutely no justification for how intelligent   design is a better model than evolution, or how  it even qualifies as a model in the first place.   Just lies and “god did it”. This is a profound  insult to the entire scientific community,   in particular the scientists who put  in the work to find, prepare, analyze,   and categorize these fossils, and Meyer deserves  nothing but contempt and ridicule for it.  Ok my friends, now we will move on to a  shorter but equally important assessment of   his second main gripe with evolution, genetics. The reason this won’t take as long as it took   to go over all that paleontology literature, is  that for most of these points we won’t have to   reference anything other than a freshman year  undergraduate understanding of genetics. That’s   how clueless Meyer is when he opens his mouth  about DNA. Let’s sample some of his stupidity.  If the Darwinian mechanism lacks the  creative power to generate the large scale,   what are called morphological innovations, the big  changes in form that arise in the fossil record,   that raises the question, well what  could produce those new forms of life?   And what we know from biology is that whenever  you see new forms of life arising, you also have   to have new information. It’s very much like in  our computer world. You wanna give your computer   a new function. You have to provide code. You have  to provide information in the form of software.   And something very similar is true in life.  If you wanna build a new form of animal life,   you have to have new organs and tissues. But new  organs and tissues require new dedicated proteins   to service those organs and tissues. For example,  many of the animals that came into the fossil   record in the Cambrian period had a gut. But guts  require digestive enzymes, and digestive enzymes   are proteins, and proteins are built in accord  with the instructions stored on the DNA molecule.   So as you see these explosions of form in the  Cambrian period or other periods in the history   of life, what you’re also seeing therefore, is  explosions of biological information. Biological   form requires biological information. Genetic  information, and other forms of information.   And that raises the question, where did that  information comes from? Now what we know from our   uniform and repeated experience, which is the  basis of all scientific reasoning about the past,   is that information, especially in a digital form,  always comes from an intelligent source. Whether   we’re talking about a paragraph in a book,  or a section of software, or a hieroglyphic   inscription, or even information embedded in  a radio signal. Whenever we see information   and we trace it back to its ultimate source, we  inevitably find a mind, not a material process.   Well if the mutation-selection mechanism is not  capable of generating the amount of information   necessary to build new forms of life, then a  better explanation is actually intelligent design.   It’s that a mind played a role in the  origin of those new forms of life. And   that’s consistent with everything we know about  the cause and effect structure of the world.  Ok, so he does this all the time. Computers  use code, and humans created that code,   so all codes have a creator. This  talking point is on every ID bingo card.   This is Kent Hovind level tripe. Someone created  this cup I’m using, so everything was created.   It’s mind-bogglingly stupid and a dishonest  talking point. To get more specific, he complains   about digestive organs requiring digestive enzymes  without bothering to make the obvious conclusion   that the enzymes can predate the organ, and also  that rudimentary organs complexify over time.   He’s trying to pretend science is suggesting  that something like the human stomach appeared   out of nowhere millions of years ago, which is  ridiculous. But to get to the heart of the matter,   Meyer is a complete dumpster fire when  it comes to the concept of information.  We know from our experience that information  always arises from an intelligent source, whether   we’re looking at a hieroglyphic inscription, or a  paragraph in a book, or information in a section   of software code, or even information embedded in  a radio signal. Whenever we see information, and   we trace it back to its source, it always comes  to a mind, not an undirected material process.  He wants the viewer to believe that information  is a material substance that needs to be   forged by intelligence, rather than what it  really is, a pattern or sequence of items.   If nucleotides polymerize to form a nucleic  acid, and that sequence acts as a template   for the synthesis of another molecule, it’s  information. It’s just a word we use to describe   something that exists, and it has zero  implications toward intelligence. Let’s   watch him milk this computer analogy some more. What happens if you introduce a few random changes   into computer code? You’ll likely mess it up,  right? Though it might still work if you don’t   make too many changes. But if you make enough  random changes your program will stop functioning   altogether. You certainly can’t keep doing this  and expect some cool new program to pop out.  There is so much wrong here. First, he  insists upon an excessive accumulation of   “random changes” to the code, which is not  how biology works, nor how software works.   He ignores both natural selection and principles  of coding. Not that it matters for biology, but   when programmers allow programs to make changes to  their own code, also known as self-modifying code,   with feedback mechanisms in place, we do not  get what Meyer says. We instead see a kind of   evolution in action, with a gradual improvement in  performance and efficiency, similar to biological   evolution. But more importantly in terms of  DNA, again, no one is proposing that there   are loads and loads of random changes occurring  very rapidly in one organism. That would be the   equivalent of someone getting blasted by huge  amounts of radiation, like a Chernobyl event,   and sustaining a ridiculous amount of mutations.  Guess what, that person would certainly develop   loads of tumors and die. That’s perfectly  analogous to his program that has its code changed   randomly and dramatically such that it doesn’t  work anymore. That’s not how evolution works.   Mutations crop up slowly and are selected for,  from one organism to the next. Each organism must   be viable for any mutations to proliferate to the  next generation. Evolution is not just mutations,   it’s mutations AND natural selection. When we want  to engineer enzymes to perform a novel activity,   the best strategy is to speed up nature, we use  random mutagenesis and select the best mutant.   Run the cycle ten times, each time picking the  best mutant, and you get a highly efficient   enzyme. It’s evolution in vitro, not design.  Similarly, if you let a program change its code   with a feedback mechanism in place analogous  to natural selection, the code will improve.   This concept is not just an analogy but actually  directly relevant to the concept of evolution   by natural selection. Stevie, do you think we  can drop this computer code thing anytime soon?  If you’re a computer programmer, you  know that if you start randomly changing   sections of functional code, you’re gonna  degrade that code long before you ever   come up with a new program or operating system. Ok, buddy. Unfortunately for Meyer it ges much   worse than this. He frequently makes the claim  that mutations cause degradation of information.  Mutations degrade information. But minds  generate information, and therefore   mind provides a better explanation for the origin  of information than the Darwinian mechanism.  This is one of my favorite sentences Meyer  has ever said, because it demonstrates   what an unbelievable moron he is. “Mutations  degrade information” is a meaningless sentence   that can serve no purpose other than to capitalize  on the complete and total ignorance of his viewers   toward what DNA is and how gene expression works.  For people who don’t know what any of these words   mean, their personal connotation with the  word “mutation” will probably be a vat of   toxic green goo. Bad, nasty mutation ooze that  dissolves kittens and all of their information.   In reality, to anyone who remembers their 9th  grade biology, mutations are simply changes in   the nucleotide sequence of a gene. For those who  are a bit rusty I have a very short and very clear   tutorial on transcription and translation  in my biochemistry series, but in short,   a gene is transcribed to generate an mRNA  which is then translated to produce a protein,   and any change in the sequence found in the  gene may result in a change in a particular   amino acid in the protein. A different sequence of  nucleotides yielding a different sequence of amino   acids. That’s it. For the organism, some mutations  are bad, the vast majority are neutral, and   improved function by random mutation is observed  in viral and bacterial evolution every single day,   both in culture and in vivo, so he would be wrong  even if he was talking about cellular function.   But he isn’t. He said “information”, again as  though referring to some nebulous, magical entity   that is separate from the DNA itself. Mutations  simply change the information. They don’t   “degrade” it, and Meyer is profoundly stupid for  having said so. He pulls this crap all the time.  Unless the chemical letters in the  DNA text are sequenced properly,   a protein molecule will not form. Nope. As long as the resulting mRNA   has a start codon, the sequence can be  literally anything, and the corresponding   protein will be produced. Astounding. In all codes and languages there are vastly more   ways of arranging characters that will generate  gibberish than there are arrangements that will   generate meaningful sequences. And this applies  to DNA. Remember, natural selection only selects   sequences that random mutations generate. Yet  experiments have established that DNA sequences   capable of making stable proteins are extremely  rare, and thus really hard to stumble on randomly.  Even more astounding. He claims sequences that  produce stable proteins are extremely rare,   when in actuality, literally any sequence would  produce a protein that is perfectly stable.   There is nothing inherently “unstable” about  proteins. Again, as long as there is a start codon   present in the resulting mRNA so that translation  can begin, the rest of the sequence is irrelevant.   Every possible three letter sequence is a codon  that corresponds to an amino acid, so no matter   what the sequence, a protein will be produced.  And proteins don’t just fall apart for no reason,   no matter what the sequence of amino acids, so  any sequence will result in a stable protein.   This “so few stable proteins” thing is an  even dumber lie than the lie he meant to tell,   which is that very few proteins have biological  function. This is obviously what he meant,   because this is what he goes on to talk about. How rare? While working at Cambridge University,   molecular biologist Douglas Axe showed that  for every DNA sequence that generates a   relatively short functional protein, there  are 10^77 power non-functional sequences.  Of course Axe is just another DI clown, so it’s  not a surprise that this is who he references.   It’s also not a surprise that they are both  profoundly wrong. This is just another example   of the “wow big scary numbers” game that ID  proponents play. First, when insisting that   10^77 proteins would not have any function, he is  pretending that he made all of these proteins and   tested their functionality. He has no idea what  functionality all those sequences would produce.   Many new sequences could have any number of other  functions. What they mean to say is that all those   other proteins would not have this particular  function held by the protein in question,   which is also unbelievably wrong. If a protein  such as an enzyme has a particular sequence,   they would have you believe that this is the  ONLY sequence that would result in this function.   That’s ridiculous. There are hundreds  of amino acid residues in a protein,   and most of them could be many different  amino acids. Anyone who thinks switching   one random leucine to isoleucine would result in  a non-functional protein is an idiot. A dramatic   change from a hydrophobic to hydrophilic residue,  for example, might change the folding pattern   slightly, and this may or may not change binding  affinity, which could become worse or better.   But many of the 20 amino acids are chemically  very similar and swapping them would result in   no change for the protein at nearly all  of the positions in the protein. I repeat,   there is plenty of variability at virtually  every single amino acid residue in any protein,   barring key residues in active sites. Therefore,  the number of amino acid sequences that would   result in a protein that carries out precisely  the same function is astronomical. Would you   like proof? Take any enzyme, like a polymerase  enzyme, which copies DNA during replication,   and look at its sequence in different organisms.  What do you know! The sequences are not identical.   They differ from species to species, despite  carrying out precisely the same function.   Let’s say it again for emphasis. There are  different versions of the same enzyme in different   species that perform the same exact function.  Clearly, nature finds something by chance that   carries out a function, this protein is retained,  and is then slowly optimized over millions of   years, or potentially exapted for another purpose,  with neutral mutations cropping up along the way   that we can use as molecular clocks to trace  lineages. Any time you hear an ID proponent   start to go off on odds of one in 10 to the 120  to the billion or whatever, you know immediately   that they are totally clueless, and just  rattling off big numbers for shock value.  This completes the analysis of Meyer’s lies about  genetics that require only a modest recollection   of freshman year biology to spot. Now let’s get  a little more technical so that we can make a   few more sophisticated points. Let’s recall how  evolution works broadly before looking at certain   organisms more specifically. Organismal variations  are the result of mutations and, in sexually   reproducing organisms, recombination, which occurs  during meiosis, as I explain in my biology series.   There are a variety of types of mutations,  including point mutations, deletions or   insertions, inversions, transpositions, and  duplications. Of course Meyer likes to pretend   that point mutations, or a change in one base  pair, are the only game in town. Or who knows,   maybe he really knows so little about genetics. At  any rate, biologists understand that mutation and   recombination occur naturally, due to exogenous  mutagens and also replicative error in the cell.   Any organism accumulates dozens of mutations even  in early embryonic development. These mutations   can affect an organism’s capacity to survive  in a given environment. Beneficial mutations   promote survival and therefore reproduction,  harmful mutations hinder them, and neutral   mutations have no effect. Thus, mutations will  spread at different rates throughout populations   depending on their effect, and these rates can be  tracked in organisms that have short generations.  Again, though the vast majority of mutations  are neutral, some beneficial mutations have   been detected in real-time. Perhaps the most  famous of these occurred in the Richard Lenski   long-term E. coli experiment where one population  developed the ability to metabolize citrate in an   aerobic environment. This happened because of  a gene duplication that placed a gene which was   only activated in anaerobic conditions under the  control of a promoter that operated in aerobic   conditions, thus conferring a novel phenotype.  This concept of promoters is covered in my   tutorial on regulation of gene expression, but  the important thing to understand is that even   without a new gene, it is merely the new location  for the duplicated gene elsewhere in the genome   which bestowed the organism with a novel cellular  function. There are many other ways large-scale   change can occur. Earlier we mentioned the point  mutation that causes the production of feathers   instead of scales, but even more significant  alterations to body plan can occur as well.   ID proponents like to pretend that organs found in  modern animals had to instantly form precisely as   they are today, but in reality, one need only look  at organ formation during embryonic development   to see how a slight difference in the instructions  or the placement of cytoplasmic determinants   can change the way cell layers are folded  to dramatically alter their layout,   as well as precisely how and  when cells differentiate,   in order to produce new organs whose  functions can optimize over long time scales.   We can even look at simple forms of extant life  to see just how simple some of these organs can   be. And a modern understanding of Hox genes  and TALE genes reveals the manner in which   relatively few genes coordinate the developing  body plan for all of Eumetazoa, and therefore   how a few changes in these genes can easily  result in dramatically different body plans.  Meyer is equally clueless when he cites what  has been called the “waiting time problem”,   or the idea that changes requiring multiple  “coordinated mutations” are impossible because it   would take so long for those specific mutations  to occur from the standpoint of probability.  And the waiting times problem has emerged as  evolutionary biologists have realized that   certain biological traits or anatomical features  would require coordinated mutations. And whereas   a single mutation might not take that long to  occur, we might not have to wait very long on   average for a single mutation to occur, with  each additional mutation the waiting times,   the expected waiting times for such an event  to occur, rises exponentially. And so if you   have complex adaptations or anatomical structures  that would require multiple coordinated mutations,   you’re going to, by the math of population  genetics, the mathematical expression of   neo-Darwinian theory, you’re going to have  to wait an enormously long time on average   for such mutations to occur, such coordinated  mutations to occur. And so once you get beyond   about three coordinated mutations the waiting  times rise dramatically, exponentially,   into the hundreds of millions or billions  of years, far more time than is allowed   for the appearance of given anatomical traits  as we find them arising in the fossil record.  This argument ignores many obvious facts. It  implies that nature must be directed toward   specific sets of mutations, which it isn’t, there  is no target. It implies that each mutation along   the way can’t have any quantifiable benefit that  could then be selected for, which makes their   calculations totally unreasonable, since their  concept of “coordination” becomes meaningless.   It implies that the changes must occur in a  sequence rather than occurring in parallel   fashion across a population, when in fact  many different mutations can indeed be arising   simultaneously across the population. And it also  ignores recombination in sexual reproduction,   which baselessly discounts the profound  evolutionary benefit of this form of reproduction,   which is the mixing and matching of genotypes,  thus dramatically accelerating the accumulation   of beneficial mutations, that again can be arising  in parallel fashion across a population. The whole   argument is ignorant of what evolution is and  does, which is why it is astounding that a handful   of papers from ID proponents citing this argument  somehow made it into peer-reviewed journals,   despite having been thoroughly discredited by  biologists. People like Meyer have a field day   whenever there is a real paper they can  point to as it almost never happens. But   unfortunately, the science just isn’t there. In general, given enough time, separate   populations develop their own mutations and  this ultimately leads to reproductive isolation,   also known as speciation. This can  occur over long stretches of time,   or in some cases, a single generation depending on  the organism. Plants, for instance, often speciate   by whole genome duplication, or polyploidy, but  this has also been observed in some animals.   For example, the marbled crayfish Procambarus  virginalis speciated from its ancestral species   Procambarus fallax in the 1990s due to a whole  genome duplication. That we have physically   observed speciation events is another dirty secret  that many creationists don’t like to acknowledge.  At first, sister species are very similar to  each other, differing only slightly in genetics,   morphology, and perhaps behavior. But over the  course of generations, these differences become   more and more pronounced. For instance, compare  the genomes of closely related species within   a genus, or multiple genera within a family.  What is apparent is the exaptation of existing   genes for new functions rather than the wholesale  development of totally new genes. Here’s just one   example. Multiple species of garter snakes within  the genus Thamnophis have evolved resistance to   newt tetrodotoxin by developing several point  mutations in a muscle sodium channel protein.  Looking even more broadly to animals as a whole,  many genes possessed by animals are also possessed   by fungi, ichthyosporeans, filastereans,  and choanoflagellates. We even share a   triple gene fusion for three genes involved  in pyrimidine biosynthesis with amoebozoans.   Animals share with the unicellular  choanoflagellates a variety of genes that   animals have fashioned for multicellularity, such  as cadherins, C-type lectins, tyrosine kinases,   and more recently discovered, a Hedgehog homolog.  And, recent phylogenetic analyses have shown that   animals underwent major gene duplication  events early in their evolutionary history   followed by large amounts of gene loss. Gene gain  and loss occur differentially across the animal   tree rather than new genes being invented  suddenly. This again favors an evolutionary   scenario rather than some kind of design. One final point before wrapping up,   the concept of “genetic information” as Meyer  applies it is so vague that it’s unusable.   There are no metrics for determining how much  information any given sequence of DNA has.   Does a longer gene have more information than a  shorter one, even if the shorter one is involved   in more processes? How much information does  a promoter region have, or a repressor region,   or an enhancer region? We can’t quantify how much  “genetic information” is needed to go from a fin   to an arm, but we can calculate how many mutations  have evidently occurred. It is for this reason   that biologists talk about specific genes and  genetic regions instead of vaguely gesturing at   “information”; the word is intentionally used  in this manner to muddy the conversation.  So that concludes a thorough assessment  of Meyer’s two biggest talking points,   the fossil record and genetics. To summarize,  we can see that when it comes to these topics,   Meyer has only one strategy. He puts forward some  premise that is really just a lie about science,   and from that he draws the conclusion “god did  it”. There are two huge problems with this. First,   again, the premise is always false. He’s  just lying. He’s lying about the duration   and nature of the Cambrian explosion. He’s  lying about the lack of transitional fossils.   He’s lying about basic, freshman year  undergraduate level genetics concepts.   The premise is always false. Furthermore, the  logic he uses to get to his conclusion is also   invalid. Even if his premise were correct, and he  was actually citing some unexplained phenomenon,   to conclude “god did it” is not scientific,  ever. End of story. We don’t know things and we   seek to figure them out. That is done through  scientific research, not pontification that   is motivated by a specific desired theological  conclusion. As an alleged philosopher of science,   it is astounding that Meyer does not grasp this.  It is also astounding how many ways these DI folks   can dress up the god of the gaps in different  costumes, to fill not just temporary gaps in   human knowledge, but gaps in their own personal  knowledge which could quickly be rectified   by learning about existing science. But in  the end that is truly the only god they have.   The pathetic, impotent god that Meyer  so desperately fights and lies for,   the one who can’t seem to figure out exactly  what it is he wants to create and when,   having to step in every few million years to  make some new stuff from scratch because he   isn’t powerful enough to manufacture a mechanism  by which the diversification happens on its own.  This is what makes Meyer yet another apologist  hack, just like the rest of them. To a layperson,   does he sound like he knows what he’s talking  about. Yes. Does he sound like a reasonable,   grounded person? Yes. Does he sound sincere  in his convictions? Yes. Is he actually any   of those things? Not even a little bit. It’s a  façade. A costume he wears for those who only need   a friendly tone and a message they want to hear,  but have no desire to actually learn a thing about   science. He is fully aware of all the research he  contradicts in his content. His career is centered   around it. One could therefore say that Meyer is  slightly more sophisticated than some apologists,   in that while some of his lies are blatantly  obvious to anyone who got a B or better in   9th grade biology, some of them do require  an investigation of the primary scientific   literature, an investigation he knows that not a  single member of his target audience will produce.   But that’s why I bring the investigation to  you, so that we can all conclude together,   religious or otherwise, that like  everyone else affiliated with the DI,   Meyer is a complete fraud. And we can now safely  cue the desperate response from Meyer and pals,   whining in their safe little blogs  shielded from outside commentary,   about what an unqualified uncredentialed loser I  am, with no acknowledgement of being completely   unable to address anything I say with even a  shred of honesty. It must be embarrassing to get   so thoroughly exposed and humiliated by someone  with such a poor pedigree, isn’t it fellas?  So that’s it, I hope you enjoyed part 2 of  this series exposing the lies and agenda of the   Discovery Institute. But don’t worry, we have many  more frauds to expose. I’ll see you next time.
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Channel: Professor Dave Explains
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Length: 75min 53sec (4553 seconds)
Published: Fri May 13 2022
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